YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21483362
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLSHLAVHT GNEDSPMQAP EEEVAKFPHI RDPKRRTYAG MISSLDKSVA QTIGALKDNG  60
   61 MLNNSIILLY SDNGAPTIGI HSNAGSNYPY RGQKESPWEG GIRSAGALWS PLLKERGYVS 120
  121 NQAIHAVDWL PTLAGAAGVS LPQDLPLDGI NLWPMLSGNE EPKPRTMIHV LDEVFGYSSY 180
  181 MRDTLKYVNG SSFKGRYDQW LGELETNEDD PLGESYEQHV LASDVQSLLG NRGLTKDRIR 240
  241 QMRSEATETC PPIEGQNPLE SHFKCEPLKA PCFFDLAKDP CERYNLAQMY PLQLQQLADE 300
  301 LEQIRKTAIP SARVPHSDSR ANPTFHNGNW EWWNNTDTQS GSGTFSINLW LAMGSIIGLV 360
  361 YRNLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	342	0.93
Transmembrane Helix	343	361	0.61
Cytoplasmic	362	365	0.38