YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18417492, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.96
Transmembrane Helix	41	60	0.74
Non-Cytoplasmic	61	91	0.68
Transmembrane Helix	92	116	0.54
Cytoplasmic	117	147	0.37
Transmembrane Helix	148	182	0.60
Non-Cytoplasmic	183	202	0.57
Transmembrane Helix	203	225	0.90
Cytoplasmic	226	237	0.65
Transmembrane Helix	238	262	0.82
Non-Cytoplasmic	263	291	0.77
Transmembrane Helix	292	314	0.90
Cytoplasmic	315	320	0.87
Transmembrane Helix	321	337	0.63
Non-Cytoplasmic	338	341	0.44
Transmembrane Helix	342	366	0.71
Cytoplasmic	367	391	0.55
Transmembrane Helix	392	411	0.73
Non-Cytoplasmic	412	548	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIRKRKNAG GDGDGGADGA SVNVGDEPDS FGGRIGSPRR IFLFCLAFRV VNALLIQTYF  60
   61 NPDEHWQSLE VAHRTIFGYG YMTWEWKRGI RSYLHPMLFA FLYKLLQVTG LDTPYIMIKA 120
  121 PRLMQSIFSA IGDLYLYKLS DALYGGNVAT WSLFCQMANW FIFFCLNRTF SNCLETVLTI 180
  181 MGLYYWPCIR DSSIDYPVNR KWGLVIAALA CAIRPTSAVI WLYVGMLELF LTPNKVKFII 240
  241 LEVIPIGSLV LGFTCLLDRL MYGSWVIVPL NFLKFNFLSS GGDYYGTHPW HWYFTQGFLV 300
  301 MLFTFTPFSI AGIIKSKNQK LSALILWVLA IYSILGHKEF RFVLPVLPIA LIFSGYAFAQ 360
  361 MEVSGSSSSS SVTKKKQVPR QNHTKWSPKL RLSVYFLLAT NIPMALYMSL FHQRGTEDAM 420
  421 NYLSDEAYKG RVKSILFLMP CHSTPYYSTL HRNIPMQFLD CTPSAEKGEL DESDQFLVNP 480
  481 LGFASELARN WSEPPSHIVL FASEETKLRD FMIQHSFKEV RRFFHAHFKV DRDLQSSVVV 540
  541 YVVNHAFP