YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21464400
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	43	0.99
N-region	1	34
H-region	35	40
C-region	41	43
Cleavage Site	43	44
Non-Cytoplasmic	44	219	0.99
Transmembrane Helix	220	240	0.95
Cytoplasmic	241	246	0.85
Transmembrane Helix	247	267	0.90
Non-Cytoplasmic	268	279	0.81
Transmembrane Helix	280	304	0.90
Cytoplasmic	305	324	0.92
Transmembrane Helix	325	347	0.93
Non-Cytoplasmic	348	364	0.96
Transmembrane Helix	365	389	0.93
Cytoplasmic	390	409	0.94
Transmembrane Helix	410	430	0.96
Non-Cytoplasmic	431	438	0.81
Transmembrane Helix	439	460	0.94
Cytoplasmic	461	496	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVKTLGAHF AAGQNAKKCS CCALLISLLC VLLLSLNPLP VTSHVTSAGS STALSSDPNL  60
   61 VLFNKCCEKF EIHVDHECQQ VNETDYFQPM FTSYGGEQNR PVKFKFVIGI PNCGSMQMWP 120
  121 IYHYAGSSDK LVLLDDGRLR HYTNAENEAE ERHGIQSDYE EDIAGSLEPL YHDYDKGLYC 180
  181 IDKATSSTGE ENVLFANICL ARKEIKWSDS NFLLRKILNP IFHGISLVIL LVIAIIYFIL 240
  241 PTLRDLVGNI VTTIAMCLMV SQAADLVRIF TELTSHVSFI VADIILCFSL LAAFFWLNSF 300
  301 GFYIWKTFRS RNVFLRVTDG RKYCYYSAYA WGCTATMAAL AVFAHFFLDA ESYKQEHMVG 360
  361 EQETIGWLGI CIFFAPIACT ILVNIFFYVT TRKLINRRTV YGRIAHKLKA NFIMFSLMLL 420
  421 VMSIAWLFLI MSWLQMEGLL YAHIVVNALQ TPLLLYICVL RQRHVTFLLK KTCCYNEPPS 480
  481 ANDWGDELHY MNGNDY