YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21464360
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQHQIRYLEQ PKQPKMAFKF TILFAACIAV ASAGIIPAAA PLAAVAQVEE YDPHPQYTYG  60
   61 YDVKDAISGD SKTQVETREG DVVQGQYSLN DADGYRRIVD YTADPINGFN AVVRREPLVA 120
  121 AVAAAPAAVV AAPAPVVRAA VAAPVVRAAP LTTTYAAAPA PLAYAAAPAP LAYAAPAPVV 180
  181 KAAPLVAAGP AIVKTQFASP LISYAY

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	40	0.94
Non-Cytoplasmic	41	117	0.95
Transmembrane Helix	118	141	0.66
Cytoplasmic	142	150	0.61
Transmembrane Helix	151	167	0.49
Non-Cytoplasmic	168	206	0.46