YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3724304, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEQKLTPPN YLTYPAQPTA IGDDEIDLRE LFRALWKGKW TIIAITLVFA IGSVIFAIMQ  60
   61 PNIYKAEALI APASEQQGGG LSALASQFGG LASLAGVNLG GKGGVDKTQM AIEVLKSRQF 120
  121 TSEFIQQHNI LADIMAAKKW DNSADQLIYD PALYNAQTHT WVREAKAPFK PEPSMQEAYK 180
  181 VFSKLVTVNK AKDSGMVTIA VEHLSPTVAQ QWVTWLIEDI NKVMKERDVA EAHRSTAFLN 240
  241 EQIALTNVAD IRTVLYKLIE EQAKTIMFAE VRDEYVFKTI DPALAPEEKA KPKRALICVL 300
  301 GTLLGGMLGV AIVLVRFAFR KAGKNHEHAD VRETA

Type	Start	End	Confidence
Cytoplasmic	1	39	0.95
Transmembrane Helix	40	59	0.96
Non-Cytoplasmic	60	79	0.88
Transmembrane Helix	80	101	0.84
Cytoplasmic	102	295	0.94
Transmembrane Helix	296	318	0.91
Non-Cytoplasmic	319	335	0.91