YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21430710
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYLTMFYDG WRDLMDNKSD LRTRDYPLMS SPFPTIAISL TYAYVVKVLG PKLMENRKPF  60
   61 ELRKVLIVYN AAQVIFSAWL FYESCIGGWL NGYNLRCEPV NYSYSPKAIR TAEGCWWYYF 120
  121 SKFTEFFDTF FFVMRKRYDQ VSTLHVIHHG IMPVSVWWGV KFTPGGHSTF FGFLNTFVHI 180
  181 FMYAYYMLAA MGPKVQKYLW WKKYLTVMQM IQFVLVMVHS FQLFFKNDCN YPIGFAYFIG 240
  241 AHAVMFYFLF SNFYKRAYVK RDGKDKASVK ANGHANGHVK ALKDGDVAPT SNGQANGFHN 300
  301 TFSKFTTDMC NPALNSSTRQ RVLVNAGNK

Type	Start	End	Confidence
Cytoplasmic	1	64	0.61
Transmembrane Helix	65	82	0.73
Non-Cytoplasmic	83	166	0.60
Transmembrane Helix	167	189	0.87
Cytoplasmic	190	203	0.85
Transmembrane Helix	204	223	0.93
Non-Cytoplasmic	224	232	0.81
Transmembrane Helix	233	254	0.90
Cytoplasmic	255	329	0.99