YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21430654
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.44
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKPALKLRR LFIITAIYIA SLPGLTVGLR NVNVRIPSAV KRGDNALLIC NYDIENDTLY  60
   61 TVKWYRGRRE FYRYTPKENP AWKIFTKTNE IDVETAQSNA SHVLLRNVPT SISGKFACEV 120
  121 SADAPTFDTS IVAADMEVVE LPTQRPIITG IHSRYRLGDV INGNCSSDYS KPAANLTWWI 180
  181 NDIQVPPNYL RIYDIQRRVA EHLESAVLEI KFVVTVHHFI KSRLKLKCSA RIHEIYAQES 240
  241 EKLIEEDRPR ILASGRSPDM NMYPFDQPGD ADEHNELFLI HSNAACGPFA WHPILFLLLW 300
  301 PSFWVFAAWE NWLWNLLEAR LFGRAVR

Type	Start	End	Confidence
Signal Peptide	1	28	0.47
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	288	0.94
Transmembrane Helix	289	309	0.81
Cytoplasmic	310	327	0.73