YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21430652
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPYLYFFCA FICNLIVYPL VTDAWLPHSE LTIISGALTF ITMCVSMYAS SHQLPDWLVI  60
   61 VSFAVNVLAK YPYEMDEVVS TRWRFLDLRV PTFSSFVIGN GIEFCLNCRT ALYLFIPVLL 120
  121 IMMAKRSRWH GVYTFLIPHC VTLSWLQVCV ATSQSSTVFG VMRAALGLAG IVLFLPLFGI 180
  181 VALLVPVFVA IDSLGLASEQ LRWGSTALAC GLVVVLSCIL ALNRATQKYI TMLQLITAIT 240
  241 TACLLVLPYM TSSFKDTPRF NAMPRAGLHS LSETNTLPWD RFHALCAQPV HEQPNKIKAQ 300
  301 LRCSLLNGMP VIWEGSVTKV EISRVSNFLE DTIANYLPVW LGRMLRCLHG ENISQHFKCD 360
  361 PKLDAQCEEW RSVFKTFNAQ SGSCTLQRWN RYEYELLVKV GTKRSGRLLG RSTTTDVILR 420
  421 AHHDFGNFTR LLSEGDVVLF YGILHNSRLL ADNVQVKLKT IECVECRSRD LGTASIERVV 480
  481 AASPMDARLQ DLMRGIKYLL NALLNPLITF K

Type	Start	End	Confidence
Cytoplasmic	1	4	0.62
Transmembrane Helix	5	26	0.80
Non-Cytoplasmic	27	30	0.53
Transmembrane Helix	31	50	0.87
Cytoplasmic	51	92	0.52
Transmembrane Helix	93	124	0.58
Non-Cytoplasmic	125	130	0.45
Transmembrane Helix	131	151	0.76
Cytoplasmic	152	163	0.50
Transmembrane Helix	164	191	0.82
Non-Cytoplasmic	192	200	0.61
Transmembrane Helix	201	222	0.91
Cytoplasmic	223	229	0.57
Transmembrane Helix	230	251	0.91
Non-Cytoplasmic	252	511	0.68