YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21430492
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAEAPNQLE KNQTATVPRQ ETAEGGSTGE TAVGGAAAKV TKEQDHDAEY HPPTSYLETI  60
   61 VHLFKGNIGP GLFAMGDAFK NGGLLVAPLL TVVIAVVSIH CQHVLVTCSK KMRDLKGDSV 120
  121 CADYAQTVEQ CFENGPSKLR GWSRTMGRLV DIFICVTQLG FCCIYFVFIS TNLKQILQAY 180
  181 DIDMNVHLVM LLAFVPVLLS SLITNLKWLT PVSMFANVCM ILGLAITLYY ALKDGLPEVE 240
  241 ERALWTNGSQ LALFFGTAIF AFEGIALVMP LKNAMRKPHQ FERPLGVLNV GMFLVSVMFM 300
  301 FAGSVGYMKW GEQVGGS

Type	Start	End	Confidence
Non-Cytoplasmic	1	83	0.55
Transmembrane Helix	84	106	0.73
Cytoplasmic	107	148	0.97
Transmembrane Helix	149	169	0.97
Non-Cytoplasmic	170	185	0.86
Transmembrane Helix	186	204	0.94
Cytoplasmic	205	212	0.71
Transmembrane Helix	213	232	0.94
Non-Cytoplasmic	233	250	0.91
Transmembrane Helix	251	271	0.93
Cytoplasmic	272	284	0.91
Transmembrane Helix	285	307	0.91
Non-Cytoplasmic	308	317	0.91