YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21430126
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLDPDPDPR ASLSLRWPAE YFAEPKASVS SISAEDELLA EQQWLWLEEV LTKSKEKQET  60
   61 VYIVGHMPPG VDERHLGTQH NQLTFTERNN QRYLDMVRRF APVIQGQFFG HLHSDTFRLI 120
  121 YDAKGNPISW LMIAPSIVPR KAGIGSSNNP ALRLYKFDTG SGQVLDYTQF WLDLPLANRA 180
  181 NEPTWQPEYN LTHYYALPEI SAVALHNFAE RFTGTDLSWF TRYHRANAVR YHSGSACPGL 240
  241 CMLNHYCAIT RLDYDEFRIC LEKEQLALQG RAPAALMPTS WSWLLGVLAV FYGLHAERWS 300
  301 GGCNNCHIQR I

Type	Start	End	Confidence
Non-Cytoplasmic	1	273	0.65
Transmembrane Helix	274	295	0.67
Cytoplasmic	296	311	0.44