YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21430034
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFNWLSEYV ASISSSIAST SPWRQLQQQV QQLVPNPQAI YCRIRSSSAE ALEHVLIACA  60
   61 VYLLVCLGLY KLTFWLSGAG SGSGLDAHHN DNDTSNAGSG EGAELNPSSD GNRSPGGLKQ 120
  121 ALQSGIRLRS VRLPKTACME RVLLITAHPD DECMFFGPLI YSLTQRQGCQ VYILCLSNGN 180
  181 FEHKAKVRRQ ELWRSCSKLG IPESNIVLMN ATNLPDDPYV DWRPDAVASL ILHTIESLDI 240
  241 QAIFTFDRDG VSSHPNHCAV YYAAASLCLA NLLPKDCKFY TLDSINVVRK YLSILDLLCT 300
  301 CFMSTHWCIL NWKEAAIVRS AMMEHQSQMR WFRWLYIYFS RYMFINSMRQ INLSDVELEM 360
  361 QIHDN

Type	Start	End	Confidence
Cytoplasmic	1	53	0.53
Transmembrane Helix	54	73	0.54
Non-Cytoplasmic	74	365	0.88