YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21429908
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIIIRRITI CMGFLLRFLE SLGISGPLHN KVFVANLDYK VDNKKLKQVF KLAGKVQSVD  60
   61 LSLDKEGNSR GFAVIEYDHP VEAVQAISML DRQMLFDRRM TVRLDRIPDK NEGIKLPEGL 120
  121 GGVGIGLGPN GEPLRDVAHN LPNGGQSQGQ LLGNAQQGSQ LGSVGSQPNS SAVSNATTNL 180
  181 LNNLTGVMFG NHAAVQPSPV APVQKPSLGN NTGSGGLNLN NLNPSILAAV VGNLGNQGGN 240
  241 LSNPLLSSSL SNLGLNLGNS GNDDNLPPSN VGLSNNYSSG GTGGGNSYSS GNNYSGGGGS 300
  301 SNLGYNAYSS SGVMGGGNGG VGVDGNDYNT GNPLDVYGGG SNVGNSNVGS ANAVGASRKS 360
  361 DTIIIKNVPI TCTWQTLRDK FREIGDVKFA EIRGNDVGVV RFFKERDAEL AIALMDGSRL 420
  421 DGRNIKVTYF

Type	Start	End	Confidence
Signal Peptide	1	21	0.57
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	430	0.99