YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21429812
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.49
Transmembrane Helix	30	54	0.59
Cytoplasmic	55	194	0.67
Transmembrane Helix	195	215	0.92
Non-Cytoplasmic	216	222	0.67
Transmembrane Helix	223	241	0.93
Cytoplasmic	242	252	0.72
Transmembrane Helix	253	274	0.91
Non-Cytoplasmic	275	281	0.73
Transmembrane Helix	282	300	0.89
Cytoplasmic	301	376	0.95
Transmembrane Helix	377	396	0.94
Non-Cytoplasmic	397	405	0.77
Transmembrane Helix	406	427	0.92
Cytoplasmic	428	437	0.73
Transmembrane Helix	438	456	0.93
Non-Cytoplasmic	457	460	0.64
Transmembrane Helix	461	484	0.76
Cytoplasmic	485	493	0.71
Transmembrane Helix	494	514	0.79
Non-Cytoplasmic	515	520	0.81
Transmembrane Helix	521	543	0.91
Cytoplasmic	544	570	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQSTENPEK NRELISEESM KDLLTKQLEV VGSGGAFVWA IFFLCVTPNI LNGFHVSSYT  60
   61 LLGHLPDDQW CGIPELQDTN WTHAQKREIV AKGLDSGGCT VWDWNYGHLA KMSYEAALNY 120
  121 TGHLTQISPP AEVSCRVKGQ HEFAHPETTF VADWDLTCDR SIQRTSAQVS ISLGKFCGSF 180
  181 SFGILADKFG RKSSFTLGAA FFIVGSFFCT FSPWYSLFLA GRFALGAASS GLFYPAFTMI 240
  241 VENICLKHRS WMSIAFSASY PVGMIILAIV GYVIQPWRHL QLALTIPSLL LILNCYLMSE 300
  301 SPLWLITNQR YDRVYKILFR QPSHYQIQPA VAAPSQVASD KKSLEPEEGF SFGQKLKNGP 360
  361 LKSIIELYAN SKVRRMIFAS YFMFCVTSLS YYVTALNAAN LSVSRYLYII GTGLVDIPSY 420
  421 LVPVIMLRFT GRRLTTMFLF LWTGVSLLLV LAVPAGSTTW IVAFAMLGRF GISATYSVVT 480
  481 LYTAELYPTQ IRNSALGTCS TFAHVGSISA PYVVDVLGAL GWYIPTTICG CCVLVAGLLT 540
  541 LTLPETGTGK LSDKVESSAS STPTEPAEKQ