YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21429702
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNSQLRKQS VQFHGQDGFG SGYGSRISIA ATQSDSRRRR RRGVGGTSGG HLFPEAISQY  60
   61 APQTYDAVWA IALALRAAEE HWRRNEEQSK LDGFDYTRSD MAWEFLQQMG KLHFLGVSGP 120
  121 VSFSGPDRVG TTAFYQIQRG LLEPVALYYP ATDALDFRCP RCRPVKWHSG QVPIAKRVFK 180
  181 LRVATIAPLA FYTIATLSSV GIALAIAFLA FNLHFRKLKA IKLSSPKLSN ITAVGCIFVY 240
  241 ATVILLGLDH STLPSAEDSF ATVCTARVYL LSAGFSLAFG SMFAKTYRVH RIFTRTGSVF 300
  301 KDKMLQDIQL ILLVGGLLLV DALLVTLWVV TDPMERHLHN LTLEISATDR SVVYQPQVEV 360
  361 CRSQHTQTWL SVLYAYKGLL LVVGVYMAWE TRHVKIPALN DSQYIGVSVY SVVITSAIVV 420
  421 VLANLISERV TLAFITITAL ILTSTTATLL SAFHPKTP

Type	Start	End	Confidence
Non-Cytoplasmic	1	188	0.86
Transmembrane Helix	189	211	0.92
Cytoplasmic	212	227	0.85
Transmembrane Helix	228	248	0.92
Non-Cytoplasmic	249	265	0.86
Transmembrane Helix	266	287	0.91
Cytoplasmic	288	307	0.93
Transmembrane Helix	308	330	0.92
Non-Cytoplasmic	331	372	0.94
Transmembrane Helix	373	389	0.90
Cytoplasmic	390	403	0.77
Transmembrane Helix	404	426	0.90
Non-Cytoplasmic	427	431	0.77
Transmembrane Helix	432	453	0.94
Cytoplasmic	454	458	0.81