YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|21428424
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFKLFRRGS ARCIGLLSAF VTILLCLYYI SIGQPNPTPI SETGAPSAAL RGSPLSGLTG  60
   61 FSVDGGSSSI IHQQKQQLVI ASNQKKSSET KSAQTSVSPE EQSEEQYTNS NWGDKCYELI 120
  121 QSNTNITASE EHSKFDFQPE WMRSKEYWDR GFEERFDAQK KDKQRPPLKI IVVPHSHNDP 180
  181 GWLKTFTNYF QSDSRQILNL LVTKMQEYTD MTFIWSEISF LQLWWDQAHP TKQRALKRLI 240
  241 DAGRIEITTG GWVMTDEANV HIYPMLDQLI EGHQWLKNNL NVTPKVGWSI DPFGHGSTVP 300
  301 YLLSGANFEG TIIQRIHYAW KQWFARQQSG DFIWKPYWRS RKDKDSEAGS LLTHNMPFDI 360
  361 YSIKGSCGPH PFICLNFDFR KIPGEYTEYS VKAQFITDDN LESKAQLLLE QYARTASLFP 420
  421 HNVALIPVGD DFRYNKDREV DQQYQNYKKL IDHIMANRRL YNADIRFGTP SDYFEAIKER 480
  481 MKDHTPGFPT FKGDFFVYSD IFSEGRPAYW SGYFTTRPFY KLLSSELEHQ LRSAEIVFTL 540
  541 AYNTARQAKR ENAIKIYEKN YELIINARRN LGLFQHHDAI TGTSKAAVMR DYAMRLFEST 600
  601 QNMVKMQESC LELLLQKGQP RHHGFLLSEF ERDNFNKLPR KMPIQMANGD ESTPTVPAGE 660
  661 GGAGGSSSSG SVGSFVLYNS LAQKRLEVVT LRVQHPNVKI VNDKGVELNH IQINPVWNIT 720
  721 DTYEQGLGTS VSGTVGRIRT STRQFEVMFV AELEPLSLST YRVQVDEVNF KRNIATIYCD 780
  781 DCTESQPASV SPPEEIESSP TSVFEARGKP AGDIQLENPH MRLLFDEKSG FLKTITRKNQ 840
  841 KKELLKPLQC NIKFAAYRSA QFHSGAYLFK TDPEQSEAEK EVLEGYTDMR IIITSGPIAS 900
  901 DVTVIYGPFL AHTVRIFNTR THLDAAIYVE NDIDF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle