YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45720461
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	117	0.73
Transmembrane Helix	118	139	0.65
Non-Cytoplasmic	140	155	0.67
Transmembrane Helix	156	186	0.66
Cytoplasmic	187	197	0.72
Transmembrane Helix	198	216	0.91
Non-Cytoplasmic	217	223	0.56
Transmembrane Helix	224	243	0.91
Cytoplasmic	244	249	0.65
Transmembrane Helix	250	269	0.70
Non-Cytoplasmic	270	276	0.81
Transmembrane Helix	277	297	0.90
Cytoplasmic	298	303	0.91
Transmembrane Helix	304	325	0.94
Non-Cytoplasmic	326	360	0.93
Transmembrane Helix	361	380	0.92
Cytoplasmic	381	396	0.82
Transmembrane Helix	397	417	0.92
Non-Cytoplasmic	418	423	0.83
Transmembrane Helix	424	446	0.89
Cytoplasmic	447	452	0.84
Transmembrane Helix	453	474	0.92
Non-Cytoplasmic	475	492	0.86
Transmembrane Helix	493	518	0.87
Cytoplasmic	519	677	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKERDSESFE SLSQVLPNTS NSARMIQMSM ANSGSAAPAP AGQDHLDRSK WLLDGPEPPS  60
   61 PWHELKTQVK ESYLTKAKKF KSLRKQPLPK RILFILQAVF PIFGWCRNYK LTMFKNDLMA 120
  121 GLTLASLCIP QSIGYATLAK LDPQYGLYTS VVPPLIYALM GTSREIAIGP VAAVSLLVSS 180
  181 MLQKLIDPET DPLSYKKLVL TTTFFAGIFQ ASFGIFRLGF LVDFLSHAAI VGFMGGAAIV 240
  241 IGLQRLKGLL GITNFTTNTD IVSVLRAVWR SCHQQWSPHT FILGCSFLSF ILITRFIGKK 300
  301 NKKLFWLPAI APLISVVVST LMVFLTKADE HGVKTVKHIK GGLNPISIND LEFNTPHLGH 360
  361 IAKIGLIVAI VALTEAIAVG RSFAGIKGYR LDGNKEMVAI GFMNVIGSFT SCYAATGSSS 420
  421 RTAVNFAAGC ETAMSNIVMA VTVFIALECL TRLLYYTPIA ILASIILSAL PGLIDIDEAI 480
  481 HIWKIDKLDF LALIGAFFGV LFGSVEIGLL VAVVISFAKI ILISIRPGIE TLGRMPGTDT 540
  541 FADTDQYPMS VKTPGVLIFR VKSALLCFAN ASSIEERIMG WIRQEEEGDE NTKSDAKRNI 600
  601 LFVVLDMSNL INVDTSGITA LVELHNNLIQ NGVELVIVNP KWTVIHKLNQ TKFINKIGGK 660
  661 VYLTIGEALD ACFGLKV