YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45720158
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPQYHFYFV SFRNLVLNEK CLRSKKRVMK SFNWYKTDRY FDPHNILQHH SRAIEKTRYK  60
   61 LGMQTSSEST DAKSDFLDEP SAYLIEKNVA LPKDIFGSYL SYWIYEAAHC TPAMILSLVI 120
  121 GVLVLLIIFF NDNEACLAFS VAFLLIFSVI LVLVLILRFG PQISDEDSKC KLLMEIITRK 180
  181 PTVKGKEWRT ITYKMNQYLF DNDLWNTPYY FYRDEDCHRY FLSLIKGRTF KKQKESSASN 240
  241 VKDAQSNDET AGTPNEAAES SSFSAGPNFI KLLTKAAEIE QQSQDEYWRQ EYPGVDEFF

Type	Start	End	Confidence
Cytoplasmic	1	107	0.91
Transmembrane Helix	108	130	0.91
Non-Cytoplasmic	131	136	0.78
Transmembrane Helix	137	159	0.91
Cytoplasmic	160	299	0.92