YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21406630
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPKVPNIQSE LSEATMMSGQ PLGSRVWLLS GVLLVTFAGT DAYGFGRCPN YPSMPKFNMS  60
   61 RVLGHWYEVE RSFYLPEIAS GCTTFQFEPY NKGEQSKFSN FKLAVAIKNI NRITGNPNVN 120
  121 IGYATPENSR SSIMDFKFTT RFPDVIARLL PGSGKYQVLY TDYENFAILW SCGSIGSLGH 180
  181 SDQIWILGRD RDFEVDIRSK VYDVLKRLSL DPERLIISKN KQCPEAL

Type	Start	End	Confidence
Cytoplasmic	1	25	0.56
Transmembrane Helix	26	45	0.76
Non-Cytoplasmic	46	227	0.78