YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20560141
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPYGRQEIT QADIDAVVEV LKSDFLTQGP MVPRFEQTVA EHVGARHAIA VNSATSALHI  60
   61 ACLALGLGVG DWLWTSPVTF VASANCGLYC GAKVDFVDID PATYNICPKA LSEKLEVARK 120
  121 DGCVPKVLVV VHLCGQPCDM KAIRDLADQY GFKIIEDASH AIGGRYLGEY IGNCRYSDIT 180
  181 IFSFHPVKII TTAEGGMALT NDDGLASRMV LLRSHGITRV PEQMTHSPDG PWYYQQVDLG 240
  241 FNYRMTELQA ALGLSQMSRL NEYVERRHKL AQRYNEKLSN LPLNTPWQDP RSYSGLHLYV 300
  301 IRLKLSEIEK THLEVFESLR KQGVGVNLHY IPVHTQPFYE RMGFSVGDFP EAEAYYREAI 360
  361 SLPMYHTLSL EQQDKVVEAL EQALLK

Type	Start	End	Confidence
Cytoplasmic	1	54	0.52
Transmembrane Helix	55	74	0.52
Non-Cytoplasmic	75	386	0.97