YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34763955, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.90
Transmembrane Helix	10	30	0.94
Non-Cytoplasmic	31	36	0.73
Transmembrane Helix	37	55	0.95
Cytoplasmic	56	75	0.84
Transmembrane Helix	76	98	0.90
Non-Cytoplasmic	99	108	0.75
Transmembrane Helix	109	129	0.92
Cytoplasmic	130	138	0.68
Transmembrane Helix	139	161	0.87
Non-Cytoplasmic	162	194	0.87
Transmembrane Helix	195	215	0.87
Cytoplasmic	216	234	0.85
Transmembrane Helix	235	256	0.86
Non-Cytoplasmic	257	309	0.84
Transmembrane Helix	310	334	0.80
Cytoplasmic	335	349	0.83
Transmembrane Helix	350	371	0.79
Non-Cytoplasmic	372	432	0.67
Transmembrane Helix	433	454	0.85
Cytoplasmic	455	475	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKQKIKPSL FVAVLPFIFL IVVMLIGNIV YGAPAQLPLI LGIAFTCILG HFLGYSYQEI  60
   61 ENSMIETNKM GLQANFIMLI VGCLIGSWIV GGVVPGMIYY GLKLFTPRIF LIILPVMCAI 120
  121 ISVSTGSAWT TAGTMGTAAM GIGVGMGIPA PLVAGAVVTG ASFGDKLSPL SDSTNLAAAT 180
  181 AEAGLFDHVR HMLKTTIPSF LIALLIYAFL GRNFGSANIN SEAIESITST LASNFKITPL 240
  241 IFIPPIIIIA VIFLKVPPVP GMLIGTFAGV GMCFYQSVDL QTILTALYEG PSIETGNAIV 300
  301 DKLLNRGGML FMMETISLVI CALAFGGAIK SIGCIDTIIE TVLKHLRRRG SIITSNVLMC 360
  361 ILCNFAAADQ YMSIVIPGQM YKKVYKKLNL APENLSRTLE DAGTLTSGLV PWSTCGAVYL 420
  421 ATLGVSAFQY GRYHILGLVN PIVAIIYAYF LICLNPLDKS KPIKDRLTYK DLKEL