YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27887330, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNYFVVKFG LAYIIDLILG DPRWLYHPVI IIGKLISFLE KILYKAKNKI FSGAILNILT  60
   61 LSTTFIVSLL LARAGYVVEI FFLYTTLATK SLADEGKKVY RILKSGDIEK AKKELSYLVS 120
  121 RDTNTLSLDK IIMSVVETIA ENTVDGFISP AFFAFVGSFF YIEIFGKVVS LALPFAMTYK 180
  181 AINTLDSMVG YKNEKYIDFG KVSARVDDIA NFIPARLTGL IFVPLSSLIL GYNFKNSLKI 240
  241 FFRDRNKHSS PNSGQSESAY AGALGIQFGG KISYFGKDYE KQKIGDKLKD FDYEDIKKAV 300
  301 NILYIASLIT TVSFILISII GGKK

Type	Start	End	Confidence
Cytoplasmic	1	52	0.56
Transmembrane Helix	53	74	0.90
Non-Cytoplasmic	75	150	0.84
Transmembrane Helix	151	171	0.77
Cytoplasmic	172	211	0.78
Transmembrane Helix	212	232	0.65
Non-Cytoplasmic	233	299	0.51
Transmembrane Helix	300	322	0.86
Cytoplasmic	323	324	0.48