YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HKT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	40	0.98
Non-Cytoplasmic	41	53	0.82
Transmembrane Helix	54	72	0.85
Cytoplasmic	73	81	0.69
Transmembrane Helix	82	104	0.91
Non-Cytoplasmic	105	161	0.88
Transmembrane Helix	162	183	0.87
Cytoplasmic	184	194	0.86
Transmembrane Helix	195	217	0.82
Non-Cytoplasmic	218	232	0.90
Transmembrane Helix	233	257	0.85
Cytoplasmic	258	279	0.92
Transmembrane Helix	280	304	0.88
Non-Cytoplasmic	305	344	0.91
Transmembrane Helix	345	366	0.85
Cytoplasmic	367	394	0.92
Transmembrane Helix	395	413	0.88
Non-Cytoplasmic	414	472	0.84
Transmembrane Helix	473	488	0.52
Cytoplasmic	489	506	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS  60
   61 VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL NLYVSYFTKF VFPHNKIRHI 120
  121 LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV 180
  181 NFVKTARDVL SSKEISPLTF SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM 240
  241 GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ 300
  301 LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL 360
  361 PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL SFLTICIFLI SITERQNLQR 420
  421 DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI 480
  481 IVMFYGRFKQ FTAKSGRAWI LYPSSS