YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15242147, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND  60
   61 ELLSEVCLIK STGSALSKLG ALGGYRVVHD SELSTETEEI AKLLGKSTGL AVVDCSASME 120
  121 TIEILMKAVD LGCCIVLANK KPVTSTLEHY DKLALHPRFI RHESTVGAGL PVIASLNRII 180
  181 SSGDPVHRIV GSLSGTLGYV MSELEDGKPL SQVVQAAKKL GYTEPDPRDD LGGMDVARKG 240
  241 LILARLLGKR IIMDSIKIES LYPEEMGPGL MSVDDFLHNG IVKLDQNIEE RVKKASSKGC 300
  301 VLRYVCVIEG SSVQVGIREV SKDSPLGRLR GSDNIVEIYS RCYKEQPLVI QGAGAGNDTT 360
  361 AAGVLADIID LQDLFH

Type	Start	End	Confidence
Signal Peptide	1	16	0.66
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	376	0.99