YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX44_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.88
Transmembrane Helix	76	96	0.62
Non-Cytoplasmic	97	103	0.58
Transmembrane Helix	104	126	0.61
Cytoplasmic	127	168	0.68
Transmembrane Helix	169	192	0.73
Non-Cytoplasmic	193	213	0.58
Transmembrane Helix	214	232	0.71
Cytoplasmic	233	241	0.30
Transmembrane Helix	242	263	0.51
Non-Cytoplasmic	264	264	0.34
Transmembrane Helix	265	287	0.79
Cytoplasmic	288	313	0.86
Transmembrane Helix	314	334	0.90
Non-Cytoplasmic	335	349	0.81
Transmembrane Helix	350	370	0.90
Cytoplasmic	371	383	0.87
Transmembrane Helix	384	407	0.91
Non-Cytoplasmic	408	422	0.91
Transmembrane Helix	423	444	0.82
Cytoplasmic	445	454	0.64
Transmembrane Helix	455	476	0.91
Non-Cytoplasmic	477	481	0.70
Transmembrane Helix	482	504	0.89
Cytoplasmic	505	521	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVATSFCF SPHRSPSRFG NPNSSIRRTI VCKSSPRDES PAVSTSSQRP EKQQNPLTSQ  60
   61 NKPDHDHKPD PGIGKIGMEI MSIALPAALA LAADPITSLV DTAFVGHIGS AELAAVGVSV 120
  121 SVFNLVSKLF NVPLLNVTTS FVAEEQAIAA KDDNDSIETS KKVLPSVSTS LVLAAGVGIA 180
  181 EAIALSLGSD FLMDVMAIPF DSPMRIPAEQ FLRLRAYGAP PIVVALAAQG AFRGFKDTTT 240
  241 PLYAVVAGNV LNAVLDPILI FVLGFGISGA AAATVISEYL IAFILLWKLN ENVVLLSPQI 300
  301 KVGRANQYLK SGGLLIGRTV ALLVPFTLAT SLAAQNGPTQ MAGHQIVLEI WLAVSLLTDA 360
  361 LAIAAQSLLA TTYSQGEYKQ AREVLFGVLQ VGLATGTGLA AVLFITFEPF SSLFTTDSEV 420
  421 LKIALSGTLF VAGSQPVNAL AFVLDGLYYG VSDFGFAAYS MVIVGFISSL FMLVAAPTFG 480
  481 LAGIWTGLFL FMALRLVAGA WRLGTRTGPW KMLWSAPEKP E