YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28393560, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSFQKSAL LVTLTLFFFI PVSISVPFIL FHGIRDQCSN GGVSSFVQLL SNLSSSHGSC  60
   61 LEIGNGEQDS VTMPLTQQAS VACEKVKQMK DLSQGYNIVA QSQGNLVARG LIEFCDNAPP 120
  121 VFNYISLGGP HAGISDIPKC NSTLCELLKT AVYTDFVQDH IAPSGYIKIP TDIKDYLEHS 180
  181 KYLPKINNER PNERNTTFKD RFTSLHNLVL VMFEGDAVVI PKESSWFGYY PDGASTPLLS 240
  241 PQQTKLYTED WIGLKTLDAA RKVKFVSVPG EHLRIAQDDV VKHVVPYLKN QPASMSEDLE 300
  301 ILHL

Type	Start	End	Confidence
Signal Peptide	1	25	0.50
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	304	0.98