YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17902560
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVSGRRVKK WQLIIQLFAT CFLASLMFFW EPIDNHIVSH MKSYSYRYLI NSYDFVNDTL  60
   61 SLKHTSAGPR YQYLINHKEK CQAQDVLLLL FVKTAPENYD RRSGIRRTWG NENYVRSQLN 120
  121 ANIKTLFALG TPNPLEGEEL QRKLAWEDQR YNDIIQQDFV DSFYNLTLKL LMQFSWANTY 180
  181 CPHAKFLMTA DDDIFIHMPN LIEYLQSLEQ IGVQDFWIGR VHRGAPPIRD KSSKYYVSYE 240
  241 MYQWPAYPDY TAGAAYVISG DVAAKVYEAS QTLNSSLYID DVFMGLCANK IGIVPQDHVF 300
  301 FSGEGKTPYH PCIYEKMMTS HGHLEDLQDL WKNATDPKVK TISKGFFGQI YCRLMKIILL 360
  361 CKISYVDTYP CRAAFI

Type	Start	End	Confidence
Cytoplasmic	1	11	0.83
Transmembrane Helix	12	30	0.86
Non-Cytoplasmic	31	376	0.99