YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTU3C_STACA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.94
Transmembrane Helix	18	40	0.90
Non-Cytoplasmic	41	78	0.93
Transmembrane Helix	79	103	0.87
Cytoplasmic	104	140	0.89
Transmembrane Helix	141	164	0.88
Non-Cytoplasmic	165	184	0.88
Transmembrane Helix	185	205	0.96
Cytoplasmic	206	223	0.82
Transmembrane Helix	224	247	0.85
Non-Cytoplasmic	248	289	0.90
Transmembrane Helix	290	308	0.91
Cytoplasmic	309	317	0.84
Transmembrane Helix	318	336	0.93
Non-Cytoplasmic	337	342	0.74
Transmembrane Helix	343	364	0.82
Cytoplasmic	365	369	0.54
Transmembrane Helix	370	389	0.78
Non-Cytoplasmic	390	395	0.65
Transmembrane Helix	396	418	0.90
Cytoplasmic	419	692	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLLKKFFG QLQRIGKALM LPVAILPAAG ILLTFGNAMH NEQILHFAPW MQHHYIQLIS  60
   61 QIMEASGQVI FDNLPLLFAM GTALGLAGGD GVAGIAALVG YLIMSATMGK IAGITIDDIF 120
  121 SYADGAKTLG QSAKDPAHAL VLGIPTLQTG VFGGIIIGAL AAWCYNKFYN IQLPQFLGFF 180
  181 AGKRFVPIIT SLVAIVTGIV LSFVWPPVQD GLNNLSNFLL GKNLALTTFI FGIIERSLIP 240
  241 FGLHHIFYAP FWFEFGHYVN ESGNLVRGDQ RIWMAQYQDG VPFTAGAFTT GKYPFMMFGL 300
  301 PAAAFAIYPQ AKPERRKVVG GLMLSAALTS FLTGITEPLE FSFLFVAPIL YVAHVILAGT 360
  361 SFLIMHLLHV QIGMTFSGGF IDYILYGLLS WDRSNALLVI PVGIAYALIY YFLFTFLIKK 420
  421 LNLKTPGRED KEVESKDVSV SELPFEVLEA MGNKDNIKHL DACITRLRVE VRDKGLVDVE 480
  481 KLKQLGASGV LEVGNNMQAI FGPKSDQIKH DMQQIMDGKI TSPAETTVTE DGDVETAEIV 540
  541 AEGGAVIYAP ITGEAVDLSE VPDKVFSAKM MGDGIAIKPE TGEVVAPFDG KVKMIFPTKH 600
  601 AIGLESKDGI ELLIHFGLET VKLDGEGFEI LVKENDNIVL GQPLMKVDLN YIKEHADDTI 660
  661 TPIIITNAGS ANIEVLHTGK VEQGEKLLLV NN