YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21392206
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAGFVIMFL STIIFAFGRS YLVLFVARAL QGIGSSCSSV SGMGMLADRF TDDKERGNAM  60
   61 GIALGGLALG VLIGPPFGGV MYEFVGKSAP FLILAALALG DGLLQLFMLQ PSIQKAETEP 120
  121 PSLKSLISDP YILIAAGAIT FANMGIAMLE PSLPLWMVDN MGATRWEQGV AFLPASISYL 180
  181 IGTNLFGPLG HKIGRWFAAC LGLIIIGGCL IFIPMATSIT HLIIPNAGLG FAIGMVDSSM 240
  241 MPELGYLVDI DTRRSTAAFT PWVMWPSVLA SPWVPPYLDR W

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.50
Transmembrane Helix	6	40	0.69
Cytoplasmic	41	58	0.71
Transmembrane Helix	59	80	0.91
Non-Cytoplasmic	81	88	0.81
Transmembrane Helix	89	109	0.94
Cytoplasmic	110	129	0.89
Transmembrane Helix	130	149	0.95
Non-Cytoplasmic	150	168	0.89
Transmembrane Helix	169	187	0.94
Cytoplasmic	188	195	0.75
Transmembrane Helix	196	216	0.92
Non-Cytoplasmic	217	221	0.59
Transmembrane Helix	222	247	0.70
Cytoplasmic	248	257	0.71
Transmembrane Helix	258	276	0.81
Non-Cytoplasmic	277	281	0.71