YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21392170
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	39	0.94
Non-Cytoplasmic	40	125	0.96
Transmembrane Helix	126	146	0.90
Cytoplasmic	147	154	0.82
Transmembrane Helix	155	176	0.86
Non-Cytoplasmic	177	182	0.71
Transmembrane Helix	183	204	0.84
Cytoplasmic	205	210	0.88
Transmembrane Helix	211	233	0.90
Non-Cytoplasmic	234	240	0.79
Transmembrane Helix	241	259	0.95
Cytoplasmic	260	331	0.98
Transmembrane Helix	332	352	0.91
Non-Cytoplasmic	353	358	0.86
Transmembrane Helix	359	379	0.93
Cytoplasmic	380	390	0.84
Transmembrane Helix	391	413	0.90
Non-Cytoplasmic	414	418	0.74
Transmembrane Helix	419	440	0.89
Cytoplasmic	441	454	0.80
Transmembrane Helix	455	475	0.91
Non-Cytoplasmic	476	482	0.75
Transmembrane Helix	483	502	0.97
Cytoplasmic	503	557	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMDFDEILV KCGDSHRYQY MLLALYGLLM FIVSRHYFAQ NVIGFVPDHW CCHEQLENRS  60
   61 YAEIAAIYAP FKRPSCTRLA SINMDGSNAT ASSEPCNRWI YHYDHGFISM NADLNWVCDD 120
  121 AYKARVGQSL FFVGSMCGTL LFGLLGDRIG RIKAVVLANC CGFLGDSATI FAETLLTFSA 180
  181 SRFVSGLAAE ANSYLMFILV LEYVSPTMRS VGLNLTMCVF YGLGMICASW QGVWLGSWRS 240
  241 FMVWTALPQL LVTGFYFLIQ ESAQWLVTRQ DFDGAELRLR RVAKFNRRDV SEADYELFRQ 300
  301 HCKTKESEAR SQMSMQKQAR LIDSFKLPRL RLRLIYVTVV FSIVTLCYNT MSRNVEGLSI 360
  361 SPFVMFSLFA LTLPPSGIFQ TQVQKHFGRK FTSVVSMTAT GLMTATTGIL LAFWTQHSAT 420
  421 VMVCLLLMCR FGISVTTGST MQISTELMPT CVRSSGLAVI HVTAAALSFI SPFILHLDTY 480
  481 FRAASSIITC ILLLVSAWIC LLLSETRNKK LPLTLAEGEE FGKGERMFDF MRSFKKADQH 540
  541 DLSADTIEKL MGDKRTY