YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21391950
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.89
Transmembrane Helix	45	65	0.94
Non-Cytoplasmic	66	72	0.85
Transmembrane Helix	73	96	0.90
Cytoplasmic	97	108	0.84
Transmembrane Helix	109	130	0.92
Non-Cytoplasmic	131	170	0.96
Transmembrane Helix	171	192	0.92
Cytoplasmic	193	201	0.82
Transmembrane Helix	202	220	0.96
Non-Cytoplasmic	221	248	0.84
Transmembrane Helix	249	269	0.88
Cytoplasmic	270	281	0.88
Transmembrane Helix	282	301	0.93
Non-Cytoplasmic	302	332	0.86
Transmembrane Helix	333	359	0.81
Cytoplasmic	360	379	0.97
Transmembrane Helix	380	401	0.88
Non-Cytoplasmic	402	407	0.74
Transmembrane Helix	408	428	0.92
Cytoplasmic	429	474	0.98
Transmembrane Helix	475	495	0.92
Non-Cytoplasmic	496	506	0.87
Transmembrane Helix	507	527	0.89
Cytoplasmic	528	537	0.84
Transmembrane Helix	538	559	0.89
Non-Cytoplasmic	560	565	0.78
Transmembrane Helix	566	585	0.94
Cytoplasmic	586	633	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAMEEFAEY YGMPSWSVTN AFRVLTRKKP LEDSNESKLA KVLSAFDLTA LGIGSTLGVG  60
   61 VYVLAGEVSK QYAGPAVVVS FLIAAIASIF AGLCYAEFGA RVPKSGSAYI YSYVTIGEFI 120
  121 AFLIGWNLIL EYAIGSASVV KGLSTYLDQL CGNPMSSFLG THMPLNIEGM GAYPDLFAFV 180
  181 VTILFSLAIA VGAKESTRVN NVFTMLNLGV VLFVIIAGLF KVSSSNWSIP KSQVPEGYGD 240
  241 GGFMPYGVSG IIKGAAVCFY GFIGFDCIAT AGEEAKNPKK SIPFAVIVSL AMIFLAYFGV 300
  301 STVLTMMLPY FEQDEKAPLP HVFRINGWHV AEYVVSIGAM FGLCSSMMGA MFPLPRIVFA 360
  361 MSNDGLLFKF LGDISEKYKT PFKGTMITGM LTGILAAVFN LSQLVNMMSI GTLLAYSMVA 420
  421 SCVLMLRYEV DDRRESRIVA NGRATGLEQD RPCALWRRIF NLNGQTVPTK QTSRIVTYSV 480
  481 TLFSLWCMVF SQILTKFEED LANVTSFDGI KLVLGTIPLA VLLLVISRQP TSGVKLSFKV 540
  541 PLVPWLPGIS ILINIYLMIK LDILTWIRFS IWIAIGLAIF LAYGIRHSRL RQREQRNNSI 600
  601 AMMRDCSNSA LLGGQENSKY SNEVPLILMH STS