YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4581477
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.98
Transmembrane Helix	109	130	0.87
Non-Cytoplasmic	131	154	0.87
Transmembrane Helix	155	176	0.90
Cytoplasmic	177	185	0.77
Transmembrane Helix	186	207	0.89
Non-Cytoplasmic	208	227	0.88
Transmembrane Helix	228	246	0.89
Cytoplasmic	247	261	0.79
Transmembrane Helix	262	285	0.87
Non-Cytoplasmic	286	302	0.81
Transmembrane Helix	303	324	0.90
Cytoplasmic	325	346	0.76
Transmembrane Helix	347	368	0.89
Non-Cytoplasmic	369	376	0.80
Transmembrane Helix	377	398	0.88
Cytoplasmic	399	405	0.81
Transmembrane Helix	406	428	0.86
Non-Cytoplasmic	429	446	0.70
Transmembrane Helix	447	468	0.93
Cytoplasmic	469	650	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHKQVAERI LNAVGRDNIQ GARHCATRLR LVLKDTGVID QEALDNDPDL KGTFEAAGQY  60
   61 QIIVGPGDVN TVYEEFIKLT GISEASTADL KEIAGSQKKQ NPVMALVKLL SDIFVPLIPA 120
  121 LVAGGLLMAL NNALTAEHLF ATKSLVEMFP MWKGFADIVN TMSAAPFTFM PILIGYSATK 180
  181 RFGGNPYLGA VVGMIMVMPG LINGYNVAEA ISNHTMTYWD IFGFKVAQAG YQGQVLPVIG 240
  241 VAFILAKLER FFHKYLNDAI DFTFTPLLSV IITGFLTFTI VGPALRFVSN GLTDGLVGLY 300
  301 NTLGALGMLV FGGFYSAIVV TGLHQSFPAI ETMLITNYQH SGIGGDFIFP VAACANMAQA 360
  361 GATFAILFVT KNIKTKALAA PAGVSAILGI TEPALFGINL KLKYPFFIAL GASAIGSLFM 420
  421 GLFHVLAVSL GSAGLIGFIS IKAGYNLQFM ISIFISFLIA FVVTSIYGRR MEAKSITKEK 480
  481 NKQNATTQYQ PEKVIIDPVK SGELLAPING FVIPLSDVSD PVFSKEIMGK GIAIKPKSGE 540
  541 LFSPADGEII IAYETGHAYG IKTKNGGEVL LHIGIDTVSM NGNGFIQNVK VGQKVKAGDL 600
  601 LGSFDKEEIK KSGLDDTVII VITNSASYNE ILPLSENVDI KVGEKILLLN