YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6691915
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.30
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRICVTYT PALPIGLCTR CCLCLEQSPS WCHCLRGVSF LTFHLHQSVP LGDRDSLLMF  60
   61 TRQAGHFVEG SKAGRSRGRL CLSQALRVAV RGAFVSLWFA AGAGDRERNK GDKGAQTGAG 120
  121 LSQEAEDVDV SRARRVTDAP QGTLCGTGNR NSGSQSARAV GVAHLGEAFR VGVEQAISSC 180
  181 PEEVHGRHGL SMEIMWAQMD VALRSPGRGL LAGAGALCMT LAESSCPDYE RGRRACLTLH 240
  241 RHPTPHCSTW GLPLRVAGSW LTVVTVEALG RWRMGVRRTG QVGPTMHPPP VSGASPLLLH 300
  301 HLLLLLLIII LTC

Type	Start	End	Confidence
Signal Peptide	1	24	0.42
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	290	0.69
Transmembrane Helix	291	312	0.67
Cytoplasmic	313	313	0.45