YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17064976, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.98
Transmembrane Helix	103	121	0.93
Non-Cytoplasmic	122	140	0.75
Transmembrane Helix	141	162	0.83
Cytoplasmic	163	170	0.77
Transmembrane Helix	171	190	0.91
Non-Cytoplasmic	191	197	0.68
Transmembrane Helix	198	219	0.88
Cytoplasmic	220	231	0.86
Transmembrane Helix	232	254	0.90
Non-Cytoplasmic	255	260	0.71
Transmembrane Helix	261	279	0.92
Cytoplasmic	280	322	0.96
Transmembrane Helix	323	344	0.91
Non-Cytoplasmic	345	363	0.83
Transmembrane Helix	364	385	0.85
Cytoplasmic	386	453	0.67
Transmembrane Helix	454	477	0.86
Non-Cytoplasmic	478	485	0.73
Transmembrane Helix	486	505	0.93
Cytoplasmic	506	512	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNARALLCSS NIHSLYTSNR PPEKTSSSRS LRNLKPSPKS LRVWIYPRNR SSVFRVLVRS  60
   61 SDKSESSNSY YVEGDKVSGN NDVVSDSPSS IVLPWWEEFP KRWVIVLLCF SAFLLCNMDR 120
  121 VNMSIAILPM SAEYGWNPAT VGLIQSSFFW GYLLTQIAGG IWADTVGGKR VLGFGVIWWS 180
  181 IATILTPVAA KLGLPYLLVV RAFMGVGEGV AMPAMNNILS KWVPVQERSR SLALVYSGMY 240
  241 LGSVTGLAFS PFLIHQFGWP SVFYSFGSLG TVWLTLWLTK AESSPLEDPT LLPEERKLIA 300
  301 DNCASKEPVK SIPRRLILSK PPVWALISCH FCHNWGTFIL LTWMPTYYHQ VLKFNLMESG 360
  361 LLSVFPWMTM AISANAGGWI ADTLVSRGFS VTNVRKIMQT IGFLGPAFFL TQLKHIDSPT 420
  421 MAVLCMACSQ GTDAFSQSGL YSNHQDIAPR YSGVLLGLSN TAGVLAGVLG TAATGHILQH 480
  481 GSWDDVFTIS VGLYLVGTVI WNLFSTGEKI ID