YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P24DA_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLQSQKLWT MLLILAIWSP ISHSLHFDLH SGRTKCIAED IKSNSMTVGK YNIDNPHEGQ  60
   61 ALPQTHKISV KVTSNSGNNY HHAEQVDSGQ FAFSAVEAGD YMACFTAVDH KPEVSLSIDF 120
  121 EWKTGVQSKS WANVAKKSQV EVMEFEVKSL LDTVNSIHEE MYYLRDREEE MQDLNRSTNT 180
  181 KMAWLSVLSF FVCIGVAGMQ FLHLKTFFEK KKVI

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	181	0.99
Transmembrane Helix	182	204	0.91
Cytoplasmic	205	214	0.93