YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18252195, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMAVKTTSL CCSSLNLTAS PTFRRNPRAA RLVNPTARIQ TRFHRLIEEQ GIVLMPGCYD  60
   61 ALSAAIVQQT GFSAGFISGY ALSASLLGKP DFGLLTPPEM AATARSVCAS APNIPIIADA 120
  121 DTGGGNALNI QRTVKDLIAA GAAGCFLEDQ AWPKKCGHMR GKQVIPAEEH AAKIASARDA 180
  181 IGDSDFFLVA RTDVRATSAK SGLEDAIARV NLYMEAGADA SFVEAPRDDD ELKEIGKRTK 240
  241 GYRVCNMIEG GVTPLHTPDE LKEMGFHLIV HPLTALYAST RALVDVLKTL KENGSTRDHL 300
  301 QKMATFEEFN SLVDLDSWFE LEARYSNLRN ALGTTKS

Type	Start	End	Confidence
Signal Peptide	1	21	0.85
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	337	0.99