YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20803883
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKPFKILRA LKTRVPSPFS MLRTTAEYVP AAAAGAAWTV FSIGPASAQV TGGTDPAKMV  60
   61 QNICTFILGP FGQSLAVLGL VAIGISWMFG RASLGLVAGV VGGIVIMFGA SFLGKALIGG 120
  121 G

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	42	0.84
Non-Cytoplasmic	43	62	0.82
Transmembrane Helix	63	87	0.84
Cytoplasmic	88	93	0.70
Transmembrane Helix	94	118	0.86
Non-Cytoplasmic	119	121	0.86