YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3378679
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQIETFYDV MRRQGITRRS FIKYCSLTAA ALGLGPSFVP RIAHAMETKP RTPVIWVHGL  60
   61 ECTCCSESFI RAAHPLAKDV VLSMISLDYD DTLMAAAGHQ AEAALMDTIE KYKGNYILAV 120
  121 EGNPPLNEDG MYCIIGGKPF VEQLKMAAEH AKAIISWGAC ASYGCVQAAA PNPTRATPVH 180
  181 KVILDKPIIK VPGCPPIAEV MTGVITYMLT FDRLPELDRQ GRPAMFYSQR IHDKCYRRPH 240
  241 FDAGQFVEAW DDDYAKKGYC LYKMGCKGPT TYNACSTVRW NEGVSFPIQS GHGCIGCSED 300
  301 GFWDQGSFYD RLTTIKQFGV EANADTIGLT AVGALGAGVA AHIAATALKS AQKKSQAANA 360
  361 AKTDEKTEA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.79
Transmembrane Helix	21	40	0.77
Non-Cytoplasmic	41	369	0.91