YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15222871, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAATRPIHA VTTWVRRQPP KVKGFLGVVS AMTALVLLRV IVHDHDNLFV AAEAVHSLGI  60
   61 SVLIYKLTKE RTCAGLSLKS QELTALFLAV RLYCSFVMEF DIHTLLDSAT LVTTLFVIYM 120
  121 IRFKLKASYM DDKDNFAIYY VVIPCVVLSV LIHPSTHHHI INKISWAFCV YLEAVSVLPQ 180
  181 LRVMQNTKIV EPFTAHYVFA LGIARFLSCA HWVLQVLDTR GRLLTALGYG FWPIMVLLSE 240
  241 IVQTFILADF CYYYVKSLMG GQLVLRLPSG VV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	42	0.93
Non-Cytoplasmic	43	48	0.88
Transmembrane Helix	49	68	0.55
Cytoplasmic	69	77	0.51
Transmembrane Helix	78	95	0.49
Non-Cytoplasmic	96	102	0.70
Transmembrane Helix	103	123	0.87
Cytoplasmic	124	135	0.89
Transmembrane Helix	136	156	0.93
Non-Cytoplasmic	157	163	0.77
Transmembrane Helix	164	183	0.62
Cytoplasmic	184	192	0.60
Transmembrane Helix	193	214	0.91
Non-Cytoplasmic	215	228	0.58
Transmembrane Helix	229	253	0.78
Cytoplasmic	254	272	0.61