YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15809927, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE  60
   61 DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL SPSSSTSSSS RNKPNSLKNL 120
  121 IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT 180
  181 PIAHSNPEST HGRFAVDLVT STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS 240
  241 PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK 300
  301 WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA 360
  361 YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV PKRYVWIYAT TQFGLVVFFS 420
  421 HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE 480
  481 TTDQNISGSR N

Type	Start	End	Confidence
Cytoplasmic	1	349	0.64
Transmembrane Helix	350	365	0.68
Non-Cytoplasmic	366	375	0.66
Transmembrane Helix	376	397	0.90
Cytoplasmic	398	403	0.85
Transmembrane Helix	404	425	0.93
Non-Cytoplasmic	426	431	0.81
Transmembrane Helix	432	454	0.94
Cytoplasmic	455	491	0.92