YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SMT3B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVALYCTA GLIAGAVYWF ICVLGPAERK GKRASDLSGG SISAEKVKDN YNQYWSFFRK  60
   61 PKEIESAEKV PDFVDTFYNL VTDIYEWGWG QSFHFSPHVP GKSDKDATRI HEEMAVDLIK 120
  121 VKPGQKILDA GCGVGGPMRA IAAHSKAQVT GITINEYQVQ RAKLHNKKAG LDSLCNVVCG 180
  181 NFLKMPFDEN TFDGAYSIEA TCHAPKLEEV YSEIFRVMKP GSLFVSYEWV TTEKYRDDDE 240
  241 EHKDVIQGIE RGDALPGLRS YADIAVTAKK VGFEVVKEKD LAKPPSKPWW NRLKMGRIAY 300
  301 WRNHVVVVIL SAIGVAPKGT VDVHKMLFKT ADYLTRGGET GIFSPMHMIL CRKPEKASE

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.74
Transmembrane Helix	6	25	0.78
Cytoplasmic	26	299	0.79
Transmembrane Helix	300	317	0.66
Non-Cytoplasmic	318	359	0.74