YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37656
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTAILIWLT LQNSIHTLLI RYSRAREVDA MFVSTVAVWL TEVIKCFICL FLVAQEETPR  60
   61 RFIHALRTQI LEQPYDTLKV CIPAMIYIVQ NNLFYVAASH LDAATFMITS QLKIFTAAIF 120
  121 TVIILRRSLN RTQWFALAVL FVGVSLVQLQ GTKAKESSGE SPFVGFVAVV VACCLSGFAG 180
  181 IYFEKILKGS APVSLWMRNV QMAVFSIPAS FSAIYMQDSK TVNEYGLLYG FDSIVWLTVL 240
  241 WYGVGGLSVA VCIKYADNIA KNFATSVAII LSTIGSIFLF DFIPSFTFLL GASLVIFSIF 300
  301 LYSSHQSMVA ALGRLRGEIP STKEAFCL

Type	Start	End	Confidence
Cytoplasmic	1	30	0.66
Transmembrane Helix	31	54	0.73
Non-Cytoplasmic	55	102	0.62
Transmembrane Helix	103	125	0.83
Cytoplasmic	126	132	0.88
Transmembrane Helix	133	152	0.93
Non-Cytoplasmic	153	162	0.85
Transmembrane Helix	163	183	0.96
Cytoplasmic	184	194	0.91
Transmembrane Helix	195	216	0.91
Non-Cytoplasmic	217	233	0.87
Transmembrane Helix	234	253	0.93
Cytoplasmic	254	261	0.77
Transmembrane Helix	262	280	0.92
Non-Cytoplasmic	281	287	0.61
Transmembrane Helix	288	306	0.90
Cytoplasmic	307	328	0.85