YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2208982
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.46
Transmembrane Helix	18	39	0.91
Cytoplasmic	40	44	0.41
Transmembrane Helix	45	67	0.77
Non-Cytoplasmic	68	85	0.45
Transmembrane Helix	86	107	0.86
Cytoplasmic	108	114	0.58
Transmembrane Helix	115	137	0.85
Non-Cytoplasmic	138	143	0.63
Transmembrane Helix	144	163	0.92
Cytoplasmic	164	167	0.64
Transmembrane Helix	168	187	0.89
Non-Cytoplasmic	188	213	0.68
Transmembrane Helix	214	239	0.73
Cytoplasmic	240	259	0.75
Transmembrane Helix	260	283	0.83
Non-Cytoplasmic	284	290	0.63
Transmembrane Helix	291	309	0.93
Cytoplasmic	310	317	0.55
Transmembrane Helix	318	339	0.90
Non-Cytoplasmic	340	352	0.65
Transmembrane Helix	353	381	0.79
Cytoplasmic	382	492	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLSSTRKDW LGNVRGDVLA GIVVALALIP EAIAFSIIAG VDPQVGLYSA FCIPLVMAFF  60
   61 GGRPAMISSS TGAMALLMVT LVKDHGLQYL LAASILTGVF QLIAGYLKLG GLMRFVSRSV 120
  121 VTGFVNALAI LIFMAQLPEL TNVTWHVYAM TAAGLGIIYL FPYINKTIPS PLVCIVVLTG 180
  181 IAMWLHLDVR TVGDMGKLPD SLPVFLLPDV PLNLQTLLII LPYSAGLAVV GLLESMMTAT 240
  241 IVDDMTDTPS DKNRECKAQG IANICTSFIG GMAGCAMIGQ SVINVKSGGR GRLSTLTAGV 300
  301 VLLCLIVFLR DWVSQIPMAA LVAVMIMVSI GTFSWRSIAN LRTHPLSTSV VMLATVAVVV 360
  361 ATHNLAFGVL TGVLIASLNF ATKVSRFMRV TSVLEGTSRT YTVTGQVFFA SADRFTSHFD 420
  421 FREAIENVVI DVSHAHFWDI TSVSALDKVV IKFRREGAGV EIRGMNEATR TIVDRFGVHD 480
  481 KPEEVEKLMG GH