YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BAC1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGESKTTTGE GFGFYKEYVA GMMAGLATVA VGHPFDTVKV KLQKHNTDVQ GLRYKNGLHC  60
   61 ASRILQTEGV KGLYRGATSS FMGMAFESSL MFGIYSQAKL FLRGTLPDDG PRPEIIVPSA 120
  121 MFGGAIISFV LCPTELVKCR MQIQGTDSLV PNFRRYNSPL DCAVQTVKND GVTGIFRGGS 180
  181 ATLLRECTGN AVFFTVYEYL RYHIHSRLED SKLKDGYLVD MGIGVLTGGL GGIACWSAVL 240
  241 PFDVAKTIIQ TSSEKATERN PFKVLSSIHK RAGLKGCYAG LGPTIVRAFP ANAAAIVAWE 300
  301 FSMKMLGIKR D

Type	Start	End	Confidence
Cytoplasmic	1	72	0.77
Transmembrane Helix	73	95	0.81
Non-Cytoplasmic	96	114	0.84
Transmembrane Helix	115	134	0.88
Cytoplasmic	135	216	0.94
Transmembrane Helix	217	240	0.82
Non-Cytoplasmic	241	283	0.86
Transmembrane Helix	284	303	0.67
Cytoplasmic	304	311	0.62