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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2288929|emb|C...
Protein type: Transmembrane
Type Confidence: 0.68
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFFGEKQH RFSLRKLAIG LVSASISSLF FVSIASSGTV FAQENAAVHY KYVTDTELSG  60
   61 QEKDLIVKDI PKIAEDSEST YYLVYRMDEK AQLGQLPNTG GQNSLTSVLT GGALASIGLL 120
  121 IFVVSKKKGK KKALLNVILV TGMGSGLASS VQAIENQLLL QYNQEYQLSQ GDSLPLPRAL 180
  181 SGYTYLGYIK QDKEINQQET AARDQKLDYT VQPHFQANEG GQKAGDEQKA PSSTSPADKT 240
  241 IPSQDLSNKK PSGIASVDPQ DEVLAGRVNK PELLYKDQEI VTKLDVSEVV QENPELTEGT 300
  301 IHVKQEGRAG KKIELVRIFT VENQEISREV LSTKVEEVLP RIVEKGTKKA VAASEAPQSA 360
  361 TKGEPETQAP LPEYTGEQAG AVVAPETAEK PEYTGTQAGA VVEPEQVAPL PEYQGTQAGA 420
  421 VVAPETSEKP EYTDTQSGAI VEPEQVAPLP EYQGTQAGAI VDPEIAEKPE YTDTQAGAIV 480
  481 EPEQVAPQAE YKGTQAGAIV EPEIQSSLPE YKGTQAGAIV EPEQVAPLPE YTGNTEQVKP 540
  541 ETPTEKPKEK DPEKTLELRN VSDLELYSQT NGTYKQHVSL DSVPKNTETY FVKVKSSSFK 600
  601 DVYLPVASIT AETKDGQPVY KITAKAEKLQ QELENKYVDN FTFYLAKKAT EETTTFTSFS 660
  661 NLVKAINKNL SGTYHLAASL NANEVELGPD ERSYIKGAFT GQLIGEKDGK QYAIYNLKKP 720
  721 LFETLSSATV EKLSLKNVSI SGKDDIGALS YEAQNGTKIK QVHVDGVLAG ERGIGGLLAK 780
  781 AEQSSITESS FKGRIINTYE TTAAYNIGGL VGHLTGDKAL LTKSKATVAI SSNTNSSDQT 840
  841 VGGLAGLVDQ DAQIQDSYAE GDINNAKHFG RVAGVAGYLW DRKTNEEQHA GRLTNVLSDV 900
  901 NVTNGNAITG YHYNGMKVKD TFSSKANRVY NVTLVKDEVV SKESFEERGT MLDASQIESK 960
  961 KAAINPLTLP TVEPLSTSGK KDSDFSKVAH YQSKRALAYK NIEKLLPFYN KATIVKYGNL1020
 1021 VNENSLLYQK ELLSAVMMKD NQVITDIVSN KQTANKLLLH YKDHSSEKLD LKYQDDFAKL1080
 1081 AEYSLGDTGL LYTPNQFLYD QSSIIKQVLP DLQKVDYHSE AIRKTLGISP NVKQTELYLE1140
 1141 DQFAKTKQHL EDSLKKLLSA DAGLAGDNPV TKGYLVDKIK HNKEALLLGM AYLERWYNFS1200
 1201 YGQVNVKDLV LYHLDFFGKG NASPLDALIE LGKSGFNNLL AKNNVDTYGI SLASHHGTTD1260
 1261 LFSTLEHYRK VFLPKTSNND WFKSETKAYI VEEKSTIEEV KTKQGQTGSK YSIGVYDRIT1320
 1321 SATWKYRNMV LPLLTLPERS VFVISTMSSL GFGAYDRYRN SEHKAGKALN DFVEENARET1380
 1381 AKRQRDHYDY WYRILDNEGR EKLYRTILLY DAYKFGDDTT SGKATVEAKF DSTNSAMKNF1440
 1441 FGPVGNKVVH NQHGAYATGD GVYYMSYRML DKDGAITYTH EMTHDSDQDI YLGGYGRRSG1500
 1501 LGPEFFAKGL LQAPDQPSDA TITINSILKH SKSDSAEGSR LQVLDPTERF QNAADLQSYV1560
 1561 HNMFDLIYML EYLEGQSIVN KLNVYQKMAA LRKIENKYVK DPADGNEVYA TNVVKELTEA1620
 1621 EAQNLNSFES LIDHNILSAR EYQTGDYERN GYYTIKLFAP IFSALSSEKG TPGDLMGRRI1680
 1681 AYELLAAKGF KDGMVPYISN QYEEAAKQKG QTINLYGKER GLVTDKLVLD KVFEGKYASW1740
 1741 AAFKKAMYKE RVDQFENLKQ VTFKDPTKPW PSYGTKTINQ VSELQALMDQ AVLKDAVSPR1800
 1801 WSNYNPEYDS AVHKLKRAIF KAYLDQTNDF RTSIFKK

YRC Informatics Platform - Version 3.0
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