YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4226003
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.64
Transmembrane Helix	7	25	0.84
Non-Cytoplasmic	26	36	0.69
Transmembrane Helix	37	57	0.83
Cytoplasmic	58	71	0.68
Transmembrane Helix	72	94	0.83
Non-Cytoplasmic	95	98	0.61
Transmembrane Helix	99	118	0.81
Cytoplasmic	119	124	0.72
Transmembrane Helix	125	148	0.86
Non-Cytoplasmic	149	156	0.83
Transmembrane Helix	157	179	0.93
Cytoplasmic	180	199	0.96
Transmembrane Helix	200	221	0.91
Non-Cytoplasmic	222	226	0.76
Transmembrane Helix	227	243	0.90
Cytoplasmic	244	257	0.72
Transmembrane Helix	258	279	0.89
Non-Cytoplasmic	280	296	0.80
Transmembrane Helix	297	316	0.88
Cytoplasmic	317	321	0.74
Transmembrane Helix	322	347	0.75
Non-Cytoplasmic	348	353	0.71
Transmembrane Helix	354	376	0.80
Cytoplasmic	377	383	0.72
Transmembrane Helix	384	407	0.86
Non-Cytoplasmic	408	415	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIGVPVAVA LGTSTVLSML LFTELDPMSI PQLVFDGINK FSLMAIPMFI LAGNLLSKGS  60
   61 SARRIIDFAK SMVGHLPGGL PMSAIFACII FAAVSGSSPA TVVAIGSIMF AAIKDAGYPA 120
  121 SYAVGGITTA GSLGILIPPS IVMIVYGVTA EESIGKLFMA GVIPGLMIGA MMMLQTYWGA 180
  181 KRLGFKATEP APFRERLQKL GKAFWALMVI FVVIGGIYGG IFTPTEAAAV SAVYAFVISY 240
  241 FVYKDIQLKD LYKVFLESAM TTSMIFFIIA NAVVFAHFLT SEQIPQTIAQ TILDHNVGKI 300
  301 GFLILVNIIL FIMGQFMEPS SVVMIMVPLL LPIATELGID PIHFGIIMVV NMELGMITPP 360
  361 VGLNLFVASG LTGMSLKDVV IASLPWTITI FIGLILVTYV PAISLWLPNL MFGTY