YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28829337, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNLFGTGS STSSSLFGST PSAGGLFGGG SSTTPATGGG GLFGGASTTP ATGGGLFGGA  60
   61 STTPATGGGL FGGASTTPAT GGGGLFGGSS TTAPATGGGG LFGGSTTTAP ATTGGLFGGS 120
  121 STTAPSTTTG GLFGGSSTTT PSITTTGGLF GGASTTAPST TTGGLFGATT PATTATTTTG 180
  181 GLFGGSTTTP SLTSGGGLFG ATTPAATTTT TSSAIPSLTS GGGLFGGSTT TPSLTSGGLF 240
  241 GATTPAATTT TSTTTPSLTS GGLFGATTPS TTGGLFGAST TTTTTPSTTS TTTPSTTTGG 300
  301 LFGATTPATT TTSGGLFGAS TTTPSTTGGL FGVSTTTPST TSATTPTTTT TGGLFGAATT 360
  361 SATTPSTTTT TTTTTPTTGL FGSSTTPSTT TSGGLFGSST TPSTTTTTTT ATTPTTGGLF 420
  421 GSSTTPSTTT TSGGLFGSSA TPSTTSSGGL FGATTTSATT TTTTPTTTSG GLFGTSSTTT 480
  481 TTTTPAAVAA TSSNPLTTSM LGGSSTTPNP VSASLNNSDP IGINESKLLE QLLNEWVSEI 540
  541 ENQTKNFYDQ AKTIFVWDQR IMDNSQKLGK LMDVVVKLNS QQNALNQCID VVRDQQALLE 600
  601 RSLNALDSKI KSSPKDNETT ADLERERIYS LATKIDDDII KVENKLLGVV NKINQNQVKD 660
  661 DNPKDLNQKV SKILNDHLNT LQWIDKSTNI LQESLKVIES TSLPETSRR

Type	Start	End	Confidence
Cytoplasmic	1	15	0.54
Transmembrane Helix	16	46	0.62
Non-Cytoplasmic	47	53	0.36
Transmembrane Helix	54	88	0.64
Cytoplasmic	89	89	0.23
Transmembrane Helix	90	119	0.60
Non-Cytoplasmic	120	128	0.40
Transmembrane Helix	129	157	0.55
Cytoplasmic	158	159	0.27
Transmembrane Helix	160	185	0.54
Non-Cytoplasmic	186	191	0.39
Transmembrane Helix	192	219	0.46
Cytoplasmic	220	220	0.22
Transmembrane Helix	221	243	0.51
Non-Cytoplasmic	244	709	0.86