YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60472081, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINSTDILVE NNEAALFLND GPEVQTYSEE VLNSLSHGIG LLLCIPAVFF LLSLARMKGS  60
   61 KWHVVSCTIY GITLMTMYFC STLYHSVDII HLQKYRNFFK DLDHCAIYML IAGTYTPLTL 120
  121 INLVYNNLNH NNNNSSSSSN QPMINGGQQQ QQQKIKTPIA KAVKIGWAMF VLIWAMCVLG 180
  181 VGSKLVLGAN GVPDIISNSF YLLMGWVSVI GLKDLIKNLP QKGLKLLVSG GITYTGGVGF 240
  241 LIWETAPFNH AVWHLFVSAG TLFHYFCILE SLLPSNLLKK DNEHNHHHNH HQQPHQIQNQ 300
  301 NQNLVNGANV VVVP

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.86
Transmembrane Helix	35	55	0.91
Cytoplasmic	56	63	0.76
Transmembrane Helix	64	85	0.87
Non-Cytoplasmic	86	104	0.80
Transmembrane Helix	105	125	0.82
Cytoplasmic	126	164	0.94
Transmembrane Helix	165	187	0.90
Non-Cytoplasmic	188	194	0.81
Transmembrane Helix	195	216	0.86
Cytoplasmic	217	222	0.96
Transmembrane Helix	223	243	0.93
Non-Cytoplasmic	244	250	0.80
Transmembrane Helix	251	269	0.93
Cytoplasmic	270	314	0.94