YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18033515
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPLGPAKPQ WLWRHCLAGL LFQLLVAVCF FSYLRVSRDD ATGFPGSGLM AVEPVTGVPN  60
   61 GSRCQDSTTT PARPTLLILL WTWPFNTPMA LPRCSEMVPG TADCNITADS DVYPQADAVI 120
  121 VHHRDIMYDP SADLPPPTRP QGQRWIWLSM ESPSNCQHLQ ALDGYFNLTM SYRSDSDIFT 180
  181 PYGWLEPWSG QPAHPPVNLS AKTELVAWAV SNWKPDSARV RYYQSLQAHL KVDVYGKSHK 240
  241 PLPRGTMMET LSRYKFYLAF ENSLHLDYIT EKLWRNALEA WAVPVVLGPS RSNYERFLPP 300
  301 DAFIHVDDFQ SPEDLARYLQ ELDKDHARYL SYFRWRETLR PRFFSWTLAF CKACWKLQEE 360
  361 SRYQTVHSIA AWFT

Type	Start	End	Confidence
Cytoplasmic	1	10	0.66
Transmembrane Helix	11	34	0.67
Non-Cytoplasmic	35	374	0.91