YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28829835, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.99
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	1088	0.97
Transmembrane Helix	1089	1108	0.90
Cytoplasmic	1109	1117	0.70
Transmembrane Helix	1118	1138	0.90
Non-Cytoplasmic	1139	1170	0.83
Transmembrane Helix	1171	1192	0.93
Cytoplasmic	1193	1347	0.97
Transmembrane Helix	1348	1367	0.58
Non-Cytoplasmic	1368	1381	0.59
Transmembrane Helix	1382	1405	0.90
Cytoplasmic	1406	1425	0.64
Transmembrane Helix	1426	1445	0.66
Non-Cytoplasmic	1446	1454	0.66
Transmembrane Helix	1455	1475	0.90
Cytoplasmic	1476	1485	0.80
Transmembrane Helix	1486	1504	0.83
Non-Cytoplasmic	1505	1511	0.69
Transmembrane Helix	1512	1531	0.89
Cytoplasmic	1532	1686	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILRNLNPKF ITTLFLLIVL LLNENVVFSQ QPQYTCSEME EPIVGDWGFS VIASSHPNIS  60
   61 ATSPWKATSS VSFCTDDMCG SSAYSLAGYY YAQFLYNESD PNTQTSTLWQ TVSLPPILPN 120
  121 EQYYLEYFLS SQFETNINPV LNVYVDNRPV ASYNGNLLLG DLERVPLESF LPSTVNIAFT 180
  181 TSYTNNGGGG GGGGGTSQSG FRIGSVIIRK PAATMPEEVY VDVAKGSDKY GNGTSVAPFS 240
  241 TIQQALNSVD FNGTIYLADG TYCNLASYLP ISRSINIISQ SGDPTKCILS GEYQLNLFKI 300
  301 SYSNQPQDLF LTSPSRRGRF RQMESYFDIS SNLITSSISG SGGSSGGDSS SSSSSSGSES 360
  361 GSDSSSSPDS KSININVKGI TVGYAYSSDN SPGGAALFIE GNVVASFSNC IFTSNADSQN 420
  421 RGSISARGNA ALILENTLVQ NCSCSKVASF GPAISMLGFG GSPTISLVNC TMTENLYNIL 480
  481 VDETSDFNMQ DSNIQGIEPI EGASLCSIML SRTQSSTINN CDIGGINNGA LCIISSTSNI 540
  541 SNTNFQGNNL KSGPGGNIYI SQGSSVTIQN VVIEDSNGNI GAAIFAMELS KVNIFNTIIR 600
  601 NIGITNSLIS SSDSDLVLSQ SSIYNTSNDY TIYLFFGSFK LFDSNITNSK GSFYATQTVI 660
  661 SISSTLFDDI SIGSHVFQDC QVEIIDSIFS NLNGFFYSSF SKIHIVGSLI ENSITQFLMI 720
  721 SPLSNVLIEN SVFSSNTDTI INLLSQSNLT VINSKFIDNF SNTSTNSILT QYEGSTSTFK 780
  781 NVLFQNNRSP GILGGCIFTF SSVVLDNCTA IGNFAKQGGV ISTTIAGNLI TIDGGIYQNN 840
  841 SASGGGGVIF YSSTPGPTIK NNAIFSGNTA SYGNNTATDA ALIDVEDPFP SSFRSGQDTY 900
  901 SGRIYIKDEE GQIVSGFEVK IFLQISGNTI DSTSTYNGIA IFSNTTLYGP INTTVDVEFL 960
  961 SNNPNLPVNQ TVSNVLKCSP GQIPSTTKIE CTECRTGSYG YNGETCVQCP SIHAYCPGGA1020
 1021 KVNQFEGWWY DVNQTDKPYV LYECPNVNCI GSNTSDMCAP YSFGPLCAQC DPGYYDWGEG1080
 1081 CKRCDKTSPI LFIAIVAVSI GMIVLVQSSD SESGLMTVII YFAQTLMVLS TGVKFNFLAL1140
 1141 LNLEFQPGGS SSIFGICPGP FDYYQQHYFT LLSAPWLIVV LLISTVFFYI VYRYKLIQKL1200
 1201 KNKIIKEQED IEKSKSISNY SSIIVTSDPG TINNSSLQKS LERKSLLRKQ QQQQQPLLEN1260
 1261 DDDDSFDSTN TTTNDGDLSR DGYSTIADGG KHSILGKSIE TSISGSLSSQ VTLIDNATAI1320
 1321 PSNQTFLSQQ LGAFIKLMLN IYTPIGKATF ELFFCENVGV SAYVLIANNG VSCYTDQYHK1380
 1381 ALMVSYCLLI VIIGFPLILM ILLFLNRKSL DDPHTQRTYG VFILKYKSSF YFWDVILLLR1440
 1441 RLLIILMSTM DPTSAARSFL LVVVSLVSVL LQLKYQPFKR ISDNRLELTS LSLLFICCVY1500
 1501 LDNTVYQSIE QWIVISSSII FFLHAVYILY SNYRYQIIDS LQHYLYIISR GKKGRKNSNT1560
 1561 TLFGSNSYFL YNQDHIYNDD DFSRDSGIFS KKDKKQSRTD KIVKKSKINN NNENNIENNN1620
 1621 ENNENNENNN NNVKEIEKIL EEESKTNFEE LNNNYYDDSD DFDEDESSDD EEDDETNGES1680
 1681 TNLLKP