YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRTP1_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.98
Transmembrane Helix	50	70	0.93
Non-Cytoplasmic	71	86	0.77
Transmembrane Helix	87	106	0.90
Cytoplasmic	107	121	0.91
Transmembrane Helix	122	142	0.93
Non-Cytoplasmic	143	149	0.74
Transmembrane Helix	150	167	0.90
Cytoplasmic	168	175	0.75
Transmembrane Helix	176	196	0.94
Non-Cytoplasmic	197	205	0.74
Transmembrane Helix	206	223	0.59
Cytoplasmic	224	238	0.44
Transmembrane Helix	239	261	0.67
Non-Cytoplasmic	262	320	0.53
Transmembrane Helix	321	343	0.85
Cytoplasmic	344	353	0.56
Transmembrane Helix	354	373	0.69
Non-Cytoplasmic	374	378	0.62
Transmembrane Helix	379	400	0.89
Cytoplasmic	401	473	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNNDKEKQP LLSSINNEDD NGATINIVEP VPWYSNIPQK IKNSMSKETI TILIYVVLYV  60
   61 TSGVINSVLL KKVMNKFTNY AFFLSQLTNF GYVPIFGAVT AYKIFFTKDI PQETRDFPTR 120
  121 KFAIMGALDA ITGFFVVIGG VSTSGPLQQL LNQAIIPFTM IASFIFLKER YSLIQLGGAL 180
  181 VIIGGVVTSL IPSLLGGSSG GNKPFWNFFY LLSVIPGALS NVYKDIGFQA VADMDVWYLQ 240
  241 YWDSLYQSIF GLFLFPVNNW LPPPATVKFE QILPFMKEGA ECLAGINSII PSYINGTSSF 300
  301 TATSCTYAPD ATITCDDCHN AWIVIILYMT INIIYNIFIL LVLKHAGATV YSIANTLRLP 360
  361 LTNIVFSIHF IMGSAVSPFS GLSVAGLVII LVGLGGYRVG SMIKQKKAAA AGGAIKVIPS 420
  421 YGPAGMDNII PVQKEYIEPK SQAHLRNQFF GKLGINVPEA RYRAANNNNY GDA